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  1. Active site - Wikipedia

    • In biology and biochemistry, the active site is the region of an enzyme where substrate molecules bind and undergo a chemical reaction. The active site consists of amino acid residues that form temporary bonds with the substrate, the binding site, and residues that catalyse a reaction of that substrate, the catalytic site. Although the active site occupies only ~10–… See more

    Binding site

    Usually, an enzyme molecule has only one active site, and the active site fits with one specific type of substrate. An active site contains a binding site that binds the substrate and orients it for catalysis. The orientation … See more

    Types of non-covalent interactions

    Electrostatic interaction: In an aqueous environment, the oppositely charged groups in amino acid side chains within the active site and substrates attract each other, which is termed electrostatic interaction. … See more

     
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  2. Pocketbook - Wikipedia

  3. Protein Pockets: Inventory, Shape, and Comparison

    Pockets from families of proteins can be examined using multiple pocket tree alignments to see how ligand binding sites or other pockets have changed with evolution. Our method is called CLIPPERS, for Complete Liberal Inventory of …

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  4. SAPocket: Finding pockets on protein surfaces with a focus …

  5. Protein Binding Pocket Dynamics

    Apr 25, 2016 · We have here introduced a classification of protein binding pocket dynamics into five classes—subpocket, adjacent pocket, breathing motion, channel/tunnel, and allosteric …

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