The numbering follows the Catalogue des solos pour Sans Souci and the Catalogue des solos pour le Nouveau Palais that contains works of both Quantz and his student Frederick II, King of Prussia. These two catalogues start at number 88. The previous Catalogue des solos pour Potsdam containing sonatas Nos. 1–87 never existed and there are no missing sonatas. Rather, the copyist of the catalog seems to have copied 87 concertos before turning to the sonatas, at which point he resumed with the no. 88 for the first sonata. The sonatas by Quantz are numbered as follows: 88–105, 142, 219–254 & 265–361. The 121 sonatas by Frederick II are: 106–141, 143–218 & 255–264. The sonatas with a Roman numeral numbering are part of the collection Sonata a flauto traverso solo e cembalo da Gio: Gioacchino Quantz.
• QV 1: 1 – Flute Sonata No. 360 in C major
• QV 1: 2 – Flute Sonata No. 284 in C major
• QV 1: 3 – Flute Sonata No. 346 in C major
• QV 1: 4 – Flute Sonata No. 241 in C major
• QV 1: 5a – Flute Sonata No. 91 in C major
• QV 1: 5b – Flute Sonata XVII in C major
• QV 1: 6 – Flute Sonata No. 226 in C major
• QV 1: 7 – Movement of Flute Sonata in C major
• QV 1: 8 – Flute Sonata No. 312 in C major
• QV 1: 9 – Flute Sonata No. 95 in C major
• QV 1: 10 – Flute Sonata No. 332 in C major
• QV 1: 11 – Flute Sonata No. 319 in C major
• QV 1: 12 – Flute Sonata No. 268 in C major
• QV 1: 13 – Flute Sonata No. 298 in C major
• QV 1: 14 – Flute Sonata No. 305 in C minor
• QV 1: 15 – Flute Sonata III in C minor
• QV 1: 16 – Flute Sonata in C minor, Op. 1 No. 3
• QV 1: 17 – Flute Sonata X in C minor
• QV 1: 18 – Flute Sonata No. 276 in C minor
• QV 1: 19 – Flute Sonata No. 339 in C minor
• QV 1: 20 – Flute Sonata No. 353 in C minor
• QV 1: 21 – Flute Sonata No. 291 in C minor
• QV 1: 22 – Flute Sonata No. 325 in C minor
• QV 1: 23 – Flute Sonata No. 250 in C minor
• QV 1: 24 – Flute Sonata XII in D major
• QV 1: 25 – Flute Sonata in D major

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The variable instrumentation of the trio sonatas in indicated in parentheses. Some of the trio sonatas call for two instruments only with the harpsichord playing one dessus and the continuo. For example, 'Sonata for flute, (violin) & harpsichord (continuo)' means that it can be played by flute, violin and continuo or flute and harpsichord.
• QV 2: 1 – Sonata for flute, violin (flute) & continuo Op. 3 No. 3 in C major
• QV 2: 2 – Sonata for flute, recorder & continuo in C major
• QV 2: 3 – Sonata for 2 flutes & continuo in C minor
• QV 2: 4 – Sonata for flute, viola d'amore & continuo in C minor
• QV 2: 5 – Sonata for flute, oboe & continuo in C minor
• QV 2: 6 – Sonata for 2 flutes & continuo Op. 3 No. 2 in D major
• QV 2: 7 – Sonata for 2 flutes & continuo in D major
• QV 2: 8 – Sonata for 2 flutes & continuo in D major
• QV 2: 9 – Sonata for flute, violin & continuo in D major
• QV 2:10 – Sonata for flute, violin & continuo Op. 3 No. 6 in D major
• QV 2:11 – Sonata for 2 flutes & continuo in D major (lost)
• QV 2:12 – Sonata for 2 flutes & continuo in D major
• QV 2:13 – Sonata for 2 flutes & continuo in D major
• QV 2:14 – Sonata for flute, (violin) & harpsichord (continuo) in D major
• QV 2:15 – Sonata for 2 flutes & continuo in D major
• QV 2:16 – Sonata for flute, violin & continuo in D minor
• QV 2:17 – Sonata for 2 flutes & continuo in E flat major
• QV 2:18 – Sonata for flute, (violin) & harpsichord (continuo) in E flat major
• QV 2:19 – Sonata for 2 flutes & continuo in E minor
• QV 2:20 – Sonata for flute, violin & continuo in E minor
• QV 2:21 – Sonata for flute, (violin) & harpsichord (continuo) in E minor
• QV 2:22 – Sonata for flute, violin (flute) & continuo in E minor
• QV 2:23 – Sonata for 2 flutes, oboes or violins & continuo Op. 3 No. 5 in E minor
• QV 2:24 – Sonata for flute, (violin) & harpsichord (continuo) in F major
• QV 2:25 – Sonata for flute, violin (flute) & continuo in F minor
• QV 2:26 – Sonata for flute, oboe d'amore (violin) & continuo in G major

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The third group of compositions gathers works for 1 to 3 flutes without continuo.
• QV 3:1. 1 – Fantasia for flute solo in C major
• QV 3:1. 2 – Fantasia for flute solo in C major
• QV 3:1. 3 – Vivace alla Francese for flute solo in D major
• QV 3:1. 4 – Capricio for flute solo in D major
• QV 3:1. 5 – Fantasia for flute solo in D major
• QV 3:1. 6 – Capricio for flute solo in D major
• QV 3:1. 7 – Praeludium for flute solo in D major
• QV 3:1. 8 – Capricio I for flute solo in D minor
• QV 3:1. 9 – Fantasia for flute solo in E minor
• QV 3:1.10 – Capricio II for flute solo in E minor
• QV 3:1.11 – Fantasia for flute solo in E minor
• QV 3:1.12 – Capricio for flute solo in F major
• QV 3:1.13 – Capricio for flute solo in G major
• QV 3:1.14 – Capricio VI for flute solo in G major
• QV 3:1.15 – Capricio IV for flute solo in G major
• QV 3:1.16 – Allegretto con variazioni for flute solo in G major
• QV 3:1.17 – Capricio V for flute solo in G major
• QV 3:1.18 – Presto for flute solo in G major
• QV 3:1.19 – Capricio VII for flute solo in A minor
• QV 3:1.20 – Menuetto for flute solo in B flat major
• QV 3:1.21 – Capricio VIII for flute solo in B flat major
• QV 3:1.22 – Adagio for flute solo in B minor
• QV 3:1.23 – Presto for flute solo in B minor
• QV 3:1.24 – Fantasia for flute solo in B minor
• QV 3:2.1 – Flute Duet Op. 2 No. 4 in C major
• QV 3:2.2 – Flute Duet Op. 2 No. 5 in D major
• QV 3:2.3 – Flute Duet Op. 2 No. 6 in E minor
• QV 3:2.4 – Flute Duet Op. 2 No. 1 in G major
• QV 3:2.5 – Flute Duet Op. 2 No. 2 in A minor
• QV 3:2.6 – Flute Duet Op. 2 No. 3 in B minor
• QV 3:2.Anh. 1 – Minuet for flute duet in D major

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